Showing posts with label human genome. Show all posts
Showing posts with label human genome. Show all posts

Sunday, November 12, 2017

Clinical somatic gene editing could be a reality, human enhancement is still a distant shot says the Bioethics committee

https://geneticliteracyproject.org
It is nearly four years ago, scientists reported that clustered regularly interspaced short palindromic repeats-Cas9 (CRISPR-Cas9) technology can enable precise and efficient genome editing in living eukaryotic cells. Since then, scientists are looking for feasibility of successful somatic and germline editing to eliminate many devastating genetic diseases. But, it also comes with a thorny international debate as it opens the door to designer babies and engineered humans.

On August 2, 2017, scientists at the Oregon Health & Science University reported that they had succeeded for the first time in United States in correction of the dominant MYBPC3 mutation that causes a late-onset familial version of hypertrophic cardiomyopathy using CRISPR/Cas9. 


What is DNA editing


One day after this paper was published in Nature, the American Society of Human Genetics (ASHG), and 11 organizations including representatives from the UK Association of Genetic Nurses and Counsellors, Canadian Association of Genetic Counsellors, the International Genetic Epidemiological Society, and the US National Society of Genetic Counselors, as well as the ASHG,  published a joint statement in August concentrating on the prospects for germline alteration. 

The statement as published in the AmericanJournal of Human Genetics, again reiterated that clinical use of germline editing is not allowed at present- these are genetic changes that would be in every cell of a resulting baby and be passed on to future generations, viewed as ‘ethical violation’ by many.  
On the plus side, it provides the only hope for some parents who are carriers of genetic diseases with their best or most acceptable option for having genetically related children who are born free of these diseases. 

Germline somatic editing has already entered clinical trials for non-heritable applications, for treating or preventing diseases or disabilities at this time.

There are three important differences between the two approaches.
1.     Somatic therapies target genes in specific types of cells (lung cells, skin cells, blood cells, etc), while germline modifications, applied to embryos, sperm or eggs, alter the genes in all the resultant person’s cells.
2.      Somatic cell modifications are not biologically transferred to next generations, so it only affects one individual.  Germline editing would be inheritable, have greater impact as it would affect the generations to come.
3.     Clinical trials involving somatic cell therapies are around over two decades now, while human germline editing studies have only just begun this year.

There are a host of unanswered ethical and scientific dilemmas, around the procedure but it does not deny the prospects of germline editing, if the ethical and policy guidelines are met. More stringent regulations would need to be in place, to ensure safety and efficacy when tinkering with human nature

Currently, heritable germline editing is not permissible in the United States.  It is only allowed for purpose of research as the statement published in the American Journal of Human Genetics after 16 months of deliberation, “Currently, there is no reason to prohibit in vitro germline genome editing on human embryos and gametes, with appropriate oversight and consent from donors, to facilitate research on the possible future clinical applications of gene editing.”

It suggested that research into genetic modifications should continue as long as it doesn’t lead to a pregnancy.

This ASHG statement is the second set of recommendations issued in 2017, following an exhaustive 300 pages NationalAcademy of Sciences, Engineering, and Medicine (NASEM) document “Human Genome Editing: Science, Ethics, and Governance.” 

The NASEM statement is more wide and covers somatic gene editing, but both the statements expressed reservations currently on using germline editing for creating ‘engineered humans’, but did not deny the possibility of it in future.

Both statements also called for public funding, for manipulating human embryos and fetuses for research, arguing that without funds the research may move offshore, where less stringent regulations and transparency prevails and that may result in rogue experimentation.

Human genome editing is already widely used in basic research and is in the early stages of development and trials for clinical applications that involve non-heritable (somatic) cells.

The Chinese and U.K laws are already in place.

Biologist Paul Knoepfler estimates that genetically modified people will no longer be a science fiction fantasy; it's a likely future scenario. Within fifteen years, scientists could use the gene editing technology CRISPR to make certain "upgrades" to human embryos — from altering physical appearances to eliminating the risk of auto-immune diseases. 

As Victor Hugo said, “there is nothing more powerful than an idea whose time has come.” So, now it’s a question of “when”, instead of “never”.
Here is a video by Françoise Baylis, a philosopher and professor at Dalhousie University, is one of the foremost voices among bioethics scholars worldwide.

Her mission is to foster an inclusive dialogue on what should and should not be allowed through gene editing. As the consequences of these decisions will affect future generations





Tuesday, May 3, 2016

Landmark study in breast cancer deciphers new genes and mutations: A step closer to personalized cancer treatment.

With more than one million cases diagnosed annually, breast cancer is the most common class of cancer diagnosed in young and old women worldwide. It is responsible for more than 400 000 deaths per year making it the leading cause of cancer mortality in women.

The largest-ever study to sequence the whole genomes of breast cancers was conducted at Wellcome Trust Sanger Institute, one of the world's leading genome centers.

Scientist are claiming to have unraveled five new genes associated with breast cancer and 13 new mutational signatures that influence tumor development. Two landmark studies published in Nature and Nature Communications  reveal the genetic variations that  exist in breast cancer and identifying their place in genome sequencing.

The study led by Dr Serena Nik-Zainal of the Wellcome Trust Sanger Institute and her team sequenced 560 breast cancer genomes; 556 from women and four from men, including patients from Europe, US and Asia because of international collaboration.

All cancers have their origin in somatically acquired mutations in cell genomes that alter the functions of key cancer genes. An understanding of these events is very important in advancing prevention, early detection, monitoring and treatment of cancer. 

Mutational processes occurring from birth generating somatic mutations imprint particular patterns of mutations on cancer genomes, termed "mutation signatures". The researchers looked for mutational signatures in each patient's tumor.

Of the 560 breast cancers, 90 had germline (60) or somatic (14) inactivating mutations in BRCA1 (35) or BRCA2 (39) or showed methylation of the BRCA1 promoter (16).

Atleast 93 mutated cancer genes (31 dominant, 60 recessive, 2 uncertain) are implicated in genesis of the disease. Additional some infrequently mutated genes do exist, but majority of genes that harbor the majority of driver mutations are now known.

Dr Nik-Zainal said: "In the future, we'd like to be able to profile individual cancer genomes so that we can identify the treatment most likely to be successful for a woman or man diagnosed with breast cancer. It is a step closer to personalised healthcare for cancer."

Prof Sir Mike Stratton, the director of the Sanger Institute in Cambridge, said it was a "milestone" in cancer research.
He told the BBC: "There are about 20,000 genes in the human genome. It turns out, now we have this complete view of breast cancer - there are 93 of those [genes] that if mutated will convert a normal breast cell into a breast cancer cell. That is an important piece of information.

The list of mutant genes and their protein will be shared with universities, the pharmaceuticals, the biotech companies to start developing targeted therapy against them. One such drug Herceptin is already in use against specific mutation.

Identifying the exact place of mutation is important too. Collaborator Dr Ewan Birney, from the European Bioinformatics Institute, used computational techniques to analyse the sequence of genetic information held in each of the sample genomes. He said: "We know genetic changes and their position in the cancer genome influence how a person responds to a cancer therapy. For years we have been trying to figure out if parts of DNA that don't code for anything specific have a role in driving cancer development. This study both gave us the first large scale view of the rest of the genome, uncovering some new reasons why breast cancer arises, and gave us an unexpected way to characterize the types of mutations that happen in certain breast cancers."

But, the role of viruses and other microbes have not been explored. Additional infrequent mutation also plays a part in causation and they need to be identified. So, additional research and exploration analysis of whole-genome sequences from breast cancer patients will be required to complete the picture.


References:
Nik-Zainal S et al. Landscape of somatic mutations in 560 breast cancer whole genome sequencesis published in Nature 2016 published on 2 May doi: 10.1038/nature17676
Morganella S et al. The topography of mutational processes in breast cancer genomes is published in Nature Communications 2016 on 2 May doi: 10.1038/10.1038/NCOMMS11383

http://www.sanger.ac.uk/news/view/five-new-breast-cancer-genes-found